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PearlOmics is a Bioinformatics Research & Innovation Centre focused on bioinformatics, computational biology, teaching, research, and scientific communication. We bridge the gap between higher education, research, and industry through practical training, research support, and scientific expertise.

Industry-Grade Genomics Solutions

Genomics & Next-Generation
Sequencing (NGS)
Solutions

End-to-end multi-omics pipelines—from high-throughput library prep and deep sequencing to publication-ready bioinformatic workflows tailored for academia, biotech, and clinical research.

Short-Read Sequencing (Illumina/MGI) Long-Read Sequencing (Nanopore/PacBio) Single-Cell & Spatial (10x Genomics) Quality Benchmark: Q30 ≥ 85%
Our Offerings

NGS Services Across Every Omics Layer

Explore our full range of genomics services — scope, deliverables, and analytical pipelines curated by domain experts.

A. Genome & Exome Profiling

Whole Genome Sequencing (WGS)

Scope

Comprehensive de novo assembly, structural variant discovery, and full-genome mutation mapping for microbes, plants, and mammalian systems.

Deliverables
Raw FastQ BAM Alignment VCF Variant Calls Annotated Genomic Variations

Whole Exome Sequencing (WES)

Scope

Targeted deep sequencing of protein-coding regions for clinical diagnostics, rare disease genetics, and somatic oncology mutations.

Deliverables
High-Coverage Annotation ClinVar/ACMG Filtering CNV Analysis

Genotyping by Sequencing (GBS) & SNP/SSR Analysis

Scope

Cost-effective high-density marker discovery for population genetics, QTL mapping, and molecular breeding programs.

Deliverables
Polymorphism Matrices Phylogenetic Clustering LD Maps

B. Transcriptomics & Single-Cell Biology

Whole Transcriptome Sequencing (RNA-Seq)

Scope

Total RNA / mRNA sequencing to quantify gene expression dynamics, novel isoform detection, and alternative splicing events across any biological system.

Deliverables
DESeq2 / EdgeR GO / KEGG Enrichment Network Interaction Maps Pathway Analysis

Single-Cell Sequencing (scRNA-Seq)

Scope

High-resolution cellular heterogeneity profiling to resolve rare sub-populations and trajectory lineages at single-cell resolution.

Deliverables
Seurat / Scanpy Clustering UMAP / t-SNE Projections Cell-Type Annotation Pseudotime Trajectory

C. Epigenomics & Chromatin Dynamics

ATAC-Seq (Chromatin Accessibility)

Scope

Genome-wide mapping of open chromatin regions to pinpoint active promoters, enhancers, and transcription factor footprints.

Deliverables
Peak Calling (MACS3) Motif Discovery RNA-Seq Integration

Bisulfite & Epigenome Sequencing (WGBS / RRBS)

Scope

Single-base resolution of DNA methylation (5mC/5hmC) to uncover epigenetic regulation in development and disease.

Deliverables
DMR Analysis Methylation Density Profiles Regulatory Region Overlaps

D. Microbiome & Metagenomics

Metagenomic Profiling (16S / 18S / ITS & Shotgun Metagenomics)

Scope

Taxonomic composition and functional gene potential across gut, environmental, soil, or clinical microbiome samples using amplicon and whole-metagenome approaches.

Deliverables
Alpha / Beta Diversity Taxonomic Abundance Trees MetaCyc / HUMAnN Pathways Metabolic Reconstruction
Our Process

From Sample to Publication-Ready Results

A rigorous, transparent four-phase pipeline that guarantees reproducibility, data integrity, and interpretive clarity.

01
Sample QC & Pick-up
02
Library Prep & Sequencing
03
Bioinformatic Pipeline
04
Final Deliverable
Ready to Sequence?

Ready to sequence your cohort?